samtools install libzma developemtn files not found

– Statistics bedcov read depth per BED region coverage alignment depth and percent coverage depth compute the depth flagstat simple stats idxstats BAM index stats phase phase heterozygotes stats generate stats (former bamcheck) ampliconstats generate amplicon specific stats – File operations collate shuffle and group alignments by name cat concatenate BAMs merge merge sorted alignments mpileup multi-way pileup sort sort alignment file split splits a file by read group quickcheck quickly check if SAM/BAM/CRAM file appears intact fastq converts a BAM to a FASTQ fasta converts a BAM to a FASTA – Editing calmd recalculate MD/NM tags and ‘=’ bases fixmate fix mate information reheader replace BAM header targetcut cut fosmid regions (for fosmid pool only) addreplacerg adds or replaces RG tags markdup mark duplicates ampliconclip clip oligos from the end of reads Program: samtools (Tools for alignments in the SAM format) Version: 1.12 (using htslib 1.12)Ĭommands: – Indexing dict create a sequence dictionary file faidx index/extract FASTA fqidx index/extract FASTQ index index alignment Sudo apt-get install liblzma-dev 这一步运行成功，没有报错。 make sudo make install Prelink: /usr/bin/abrt-action-analyze-python: at least one of file's dependencies has changed since prelinking Prelink: /usr/bin/abrt-action-analyze-python: Could not find one of the dependencies Unable to find Subscription Manager module.Įrror: liblzma.so.5: cannot open shared object file: No such file or directory # ġ:xz-libs # Ģ:xz # ģ:xz-lzma-compat # badevraj]# subscription-manager register -username=xxxxxxx -password=xxxxxxxx -auto-attach There was a problem importing one of the Python modules required to run yum: liblzma.so.5: cannot open shared object file: No such file or badevraj]# rpm -ivh xz-4.999.9-0.5.86_64.rpm xz-libs-4.999.9-0.5.86_64.rpm xz-lzma- compat-4.999.9-0.5.86_64.rpm -force -nodeps

Samtools install libzma developemtn files not found